pip install -U pip setuptools wheel
pip install "en-core-med7-lg @ https://huggingface.co/kormilitzin/en_core_med7_lg/resolve/main/en_core_med7_lg-1.1.0-py3-none-any.whl"
en_core_med7_lg is a non-transformer, large-vector spaCy pipeline for medication-related named entity recognition in English clinical text.
The model extracts the following entity types:
DRUGSTRENGTHDOSAGEDURATIONFREQUENCYFORMROUTECurrent release: 1.1.0
This release was retrained and repackaged for the modern spaCy/transformers stack:
3.12.133.8.14Unlike en_core_med7_trf, this model does not use a transformer backend and does not require spacy-transformers, transformers, tokenizers, or torch at runtime.
If you use this model, please cite the original Med7 paper:
Kormilitzin, A., Vaci, N., Liu, Q., & Nevado-Holgado, A. (2021). Med7: A transferable clinical natural language processing model for electronic health records. Artificial Intelligence in Medicine, 118, 102086. https://doi.org/10.1016/j.artmed.2021.102086
BibTeX:
@article{kormilitzin2021med7,
title = {Med7: A transferable clinical natural language processing model for electronic health records},
author = {Kormilitzin, Andrey and Vaci, Nemanja and Liu, Qiang and Nevado-Holgado, Alejo},
journal = {Artificial Intelligence in Medicine},
volume = {118},
pages = {102086},
year = {2021},
doi = {10.1016/j.artmed.2021.102086},
publisher = {Elsevier}
}